Protein ZmRAV1 | |
---|---|
Information | |
TF Name: | ZmRAV1 |
Species: | Maize |
TF Family: | RAV |
Gene Name(Synonym): | ZmEREB126 |
Uniprot ID: | B6TX04 |
Subgenome: | 1 |
ZmRAV1 is a protein in the RAV family.
Overview of domains present in v5 transcripts | ||
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PF00847 | PF02362 | |
Zm00001eb156040_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d043782 | DAPseq | sequence | fimo | position | |
Zm00001d043782 | DAPseq | sequence | fimo | position | |
Zm00001d043782 | ChIPseq | sequence | fimo | position | |
Zm00001d043782 | PChIPseq | sequence | fimo | position |
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
Secondary Structure Color Code | |
---|---|
BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
---|---|
PF00847 |
|
PF02362 |
|
Hover here to show all domains |
CCGCGCTCTCTTCACTCTCCTCCAG...
CCGCGCTCTCTTCACTCTCCTCCAGTGAGTCTCCACCCACCCACCGAGCCTATATATCCCTCTGCATCCTCCCTTCCCTCCCAGCCTATCCTACAACACCTCCCGCAACAGAAGCATACGCCGTGCCCAGCTATCTATAGCTAGCACTAGCAGTGGTGCACACTGAAATGGACAGCGCCAGCAGCCTCGTGGACGACACCAGTAGCGGTGGCGGCGGCGGCGCGTCCACGGACAAGCTAAGGGCTCTGGCCGTCTTCGCCGCCGCCTCGGGGACGCCGCTGGAGCGCATGGGCAGCGGCGCCAGCGCGGTCGTGGACGCGGCCGAGCCGGGCGCCGAGGCGGACTCCGGTTCCGGTGCCGCCGCGGTGAGCGTCGGCGGGAAGCTGCCGTCGTCAAGGTACAAGGGCGTGGTGCCGCAGCCCAACGGGCGGTGGGGCGCGCAGATCTACGAGCGCCACCAGCGCGTGTGGCTCGGCACCTTCGCGGGCGAGGCCGACGCGGCGCGCGCCTACGACGTCGCGGCGCAGCGGTTCCGCGGCCGCGACGCGGTCACCAACTTCCGCCCGCTCGCGGACGCCGACCCGGACGCCGCCGCCGAGCTCCGGTTCCTGGCGTCCCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACTTCGACGAGCTCGCGCAGAACAAGCGCGCCTTCGCCGCCGCGTCCGCGTCCGCGGCCACCGCCTCGTCGCTGGCCAACAACCCTTCTTCCTACGCGTCGCTCTCCCCCGCGACCGCGACGGCCGCCGCGCGGGAGCACCTCTTCGACAAGACGGTCACCCCCAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCCGAGAAGCACTTCCCGCTGCAGCTCCCATCCGCCGGCGGCGAGAGCAAGGGCGTGCTCCTCAACCTGGAGGACGCCGCGGGCAAGGTGTGGCGGTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTTCGTCAAGGAGAAGGGCCTCCAAGCCGGCGACGTCGTCGGCTTCTACCGCTCCGCTGCCGGCGCCGACACCAAGCTCTTCATCGACTGCAAGCTGCGGCCCAACAGCGTCGTCGTCGCCTCGACGGCAGGCCCGTCGCCTCCGGCGCCGGTGGCGAAGGCCGTGCGTCTCTTCGGCGTCGACCTGCTGACGGCACCGGCCACCGCCGCGGCGCCGGCGGAGGCCGTGGCCGGGTGCAAGAGAGCCAGGGACTTGGGTTCGCCCCCGCAGGCGGCGTTCAAGAAGCAGCTCGTGGAGCTGGCACTAGTGTAGATTAATGCTACGGAGCGATCGATCTTTCCCTGGCTAGCTAGTCTTTTTTTTTTTTGCTCGATCGCTCAACTCAGATGGTAGCATCACCGAGCTGAATTTAGTTCCCTCTCGGCATCTCACTTAGTTGGTTCGTTTGTTAATTTCCAGTTTCACCATCCTTTTTGCTTTGCTTTGATGTAAATCTTCTCATCAACTGTATACTGCTAATGAAAAAAAAACAGTCCAAGAAGGCTAGATGATGGTCAACTGGCACAGAAGGAACAGAAACATTCTAAATTAACATCATGGTTAATAACTGTCAATTGCTCGT
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
AGTCCCCAGAAGAAAAGAACTACGC...
AGTCCCCAGAAGAAAAGAACTACGCCGCGCTCTCTTCACTCTCCTCCAGTGAGTCTCCACCCACCCACCGAGCCTATATATCCCTCTGCATCCTCCCTTCCCTCCCAGCCTATCCTACAACACCTCCCGCAACAGAAGCATACGCCGTGCCCAGCTATCTATAGCTAGCACTAGCAGTGGTGCACACTGAAATGGACAGCGCCAGCAGCCTCGTGGACGACACCAGTAGCGGTGGCGGCGGCGGCGCGTCCACGGACAAGCTAAGGGCTCTGGCCGTCTTCGCCGCCGCCTCGGGGACGCCGCTGGAGCGCATGGGCAGCGGCGCCAGCGCGGTCGTGGACGCGGCCGAGCCGGGCGCCGAGGCGGACTCCGGTTCCGGTGCCGCCGCGGTGAGCGTCGGCGGGAAGCTGCCGTCGTCAAGGTACAAGGGCGTGGTGCCGCAGCCCAACGGGCGGTGGGGCGCGCAGATCTACGAGCGCCACCAGCGCGTGTGGCTCGGCACCTTCGCGGGCGAGGCCGACGCGGCGCGCGCCTACGACGTCGCGGCGCAGCGGTTCCGCGGCCGCGACGCGGTCACCAACTTCCGCCCGCTCGCGGACGCCGACCCGGACGCCGCCGCCGAGCTCCGGTTCCTGGCGTCCCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACTTCGACGAGCTCGCGCAGAACAAGCGCGCCTTCGCCGCCGCGTCCGCGTCCGCGGCCACCGCCTCGTCGCTGGCCAACAACCCTTCTTCCTACGCGTCGCTCTCCCCCGCGACCGCGACGGCCGCCGCGCGGGAGCACCTCTTCGACAAGACGGTCACCCCCAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCCGAGAAGCACTTCCCGCTGCAGCTCCCATCCGCCGGCGGCGAGAGCAAGGGCGTGCTCCTCAACCTGGAGGACGCCGCGGGCAAGGTGTGGCGGTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTTCGTCAAGGAGAAGGGCCTCCAAGCCGGCGACGTCGTCGGCTTCTACCGCTCCGCTGCCGGCGCCGACACCAAGCTCTTCATCGACTGCAAGCTGCGGCCCAACAGCGTCGTCGTCGCCTCGACGGCAGGCCCGTCGCCTCCGGCGCCGGTGGCGAAGGCCGTGCGTCTCTTCGGCGTCGACCTGCTGACGGCACCGGCCACCGCCGCGGCGCCGGCGGAGGCCGTGGCCGGGTGCAAGAGAGCCAGGGACTTGGGTTCGCCCCCGCAGGCGGCGTTCAAGAAGCAGCTCGTGGAGCTGGCACTAGTGTAGATTAATGCTACGGAGCGATCGATCTTTCCCTGGCTAGCTAGTCTTTTTTTTTTTTGCTCGATCGCTCAACTCAGATGGTAGCATCACCGAGCTGAATTTAGTTCCCTCTCGGCATCTCACTTAGTTGGTTCGTTTGTTAATTTCCAGTTTCACCATCCTTTTTGCTTTGCTTTGATGTAAATCTTCTCATCAACTGTATACTGCTAATGAAAAAAAAACAGTCCAAGAAGGCTAGATGATGGTCAACTGGCACAGAAGGAACAGAAACATTCTAAATTAACATCATGGTTAATAACTGTCAATTGCTCGTGCATCAGATCGAAAGATATTACGACATTTCGAATTTCCAGATTCCAGATGCTCCCTGCCATCCATGATCCATCTACATCTACAGGTGGCAGGGGAGCTGTATGTAGGAGTCTTCAG
MDSASSLVDDTSSGGGGGASTDKLRALAVFAAASGTPLERMGSGASAVVDAAEPGAEADSGSGAAAVSVGGKLPSSRYKG
VVPQPNGRWGAQIYERHQRVWLGTFAGEADAARAYDVAAQRFRGRDAVTNFRPLADADPDAAAELRFLASRSKAEVVDML
RKHTYFDELAQNKRAFAAASASAATASSLANNPSSYASLSPATATAAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFP
LQLPSAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRSAAGADTKLFIDCKLRP
NSVVVASTAGPSPPAPVAKAVRLFGVDLLTAPATAAAPAEAVAGCKRARDLGSPPQAAFKKQLVELALV
ATGGACAGCGCCAGCAGCCTCGTGG...
ATGGACAGCGCCAGCAGCCTCGTGGACGACACCAGTAGCGGTGGCGGCGGCGGCGCGTCCACGGACAAGCTAAGGGCTCTGGCCGTCTTCGCCGCCGCCTCGGGGACGCCGCTGGAGCGCATGGGCAGCGGCGCCAGCGCGGTCGTGGACGCGGCCGAGCCGGGCGCCGAGGCGGACTCCGGTTCCGGTGCCGCCGCGGTGAGCGTCGGCGGGAAGCTGCCGTCGTCAAGGTACAAGGGCGTGGTGCCGCAGCCCAACGGGCGGTGGGGCGCGCAGATCTACGAGCGCCACCAGCGCGTGTGGCTCGGCACCTTCGCGGGCGAGGCCGACGCGGCGCGCGCCTACGACGTCGCGGCGCAGCGGTTCCGCGGCCGCGACGCGGTCACCAACTTCCGCCCGCTCGCGGACGCCGACCCGGACGCCGCCGCCGAGCTCCGGTTCCTGGCGTCCCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACTTCGACGAGCTCGCGCAGAACAAGCGCGCCTTCGCCGCCGCGTCCGCGTCCGCGGCCACCGCCTCGTCGCTGGCCAACAACCCTTCTTCCTACGCGTCGCTCTCCCCCGCGACCGCGACGGCCGCCGCGCGGGAGCACCTCTTCGACAAGACGGTCACCCCCAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCCGAGAAGCACTTCCCGCTGCAGCTCCCATCCGCCGGCGGCGAGAGCAAGGGCGTGCTCCTCAACCTGGAGGACGCCGCGGGCAAGGTGTGGCGGTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTTCGTCAAGGAGAAGGGCCTCCAAGCCGGCGACGTCGTCGGCTTCTACCGCTCCGCTGCCGGCGCCGACACCAAGCTCTTCATCGACTGCAAGCTGCGGCCCAACAGCGTCGTCGTCGCCTCGACGGCAGGCCCGTCGCCTCCGGCGCCGGTGGCGAAGGCCGTGCGTCTCTTCGGCGTCGACCTGCTGACGGCACCGGCCACCGCCGCGGCGCCGGCGGAGGCCGTGGCCGGGTGCAAGAGAGCCAGGGACTTGGGTTCGCCCCCGCAGGCGGCGTTCAAGAAGCAGCTCGTGGAGCTGGCACTAGTGTAG
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